rs29996682 SNP Detail

Summary

• ID
  rs29996682
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30309407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCTAAG AGGAACTGTC
  TACGCCAGCT TGGCTTGTGG GGCAGATAGG GAGTGTCTTG GTTGTTAATT CATGTAGGAG
  GATCCAGCCC AGTGTGGGTG GCCTTGGACT ATGCCAGGAA GTTAGGTGTA AGCCAGTCCA
  TGATTCAGTT AGCAAGCAGC GTCTATGGTT CCCAAGGTAG TTCTTTAGCT ATGAAGTGAG
  S
  TCTGTGGTGC ACTACAGAGT AATTCTGTGT GGAACACTGA GCAGTCTGCC TTTACATTCC
  TGCTCAGATT CCTGCCTTGC CTTCCTTCAT TGGCAGACTG TAACAGGTTG GATGAAGAAA
  ATCCTTTTAT CCCATAAGTT GCTATGGATC AGAATTTTAT CCCGACCCCA GAAATCAAAC
  TGCGACAGAG TGTTAGGCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49089308	NES12419188	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29996682					SNP	C	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49089308	NES12419188	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30309407 () rs orientation: forward

Symbol	Name	Function Class
Gm61363	predicted gene, 61363	within coordinates
Rr388193	regulatory region 388193	963 bp downstream