rs29996928 SNP Detail

Summary

• ID
  rs29996928
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:53799923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGACCA GTGTCAACTA TTTCCATCGG GAGCCTGTAT
  TGCCAATGAA AAAGCACCAA CCATAGCTTT GTCTCAAAGA CAATTGCTCT TCGATCACAT
  TCTATCTTCT TGAAATAACC CATTTGCTGC AGGTGGTTAA CACAATGGGT ATAATGGAAC
  W
  TGTTTCTAGT TAGTAGGCAC AGTTTCTGAT GGTAGGTGTT GCTGGCACCC TCAACCCAAC
  ATTAGCAAGG AAGAATGTTT TGAACTCTAC AGATAAAAGG GTAGCACACA GCACTCAGAT
  TCCCTCTCCA AAAAAAAAAA AAAAAAAAAA AAAGGGACAG GTACCACATC CATCCACAAG
  TTTACCTTCT TGAGAAGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47901858	NES11645745	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29996928					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47901858	NES11645745	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:53799923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17455	CpG island 17455	1804 bp distal
Gm16499	predicted gene 16499	788 bp upstream
Gm68353	predicted gene, 68353	1709 bp upstream
Rr630655	regulatory region 630655	1337 bp distal
Tssr61066	transcription start site region 61066	1983 bp upstream
Tssr61067	transcription start site region 61067	1679 bp upstream