rs29997222 SNP Detail

Summary

• ID
  rs29997222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63239465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGCGAG TTCCAGGAAA
  TCCAGGGCTA CACTGAGAGA AACACTGTGT CGGAAGACCA AACCAAACCC AAACCACTGA
  TGCTTAAGCG CATCCATTGC CGCCGCTTTG CGGCTTTGCC GCCTTCACAG ATGCCCCACC
  CCACCGCGGC ATCGATCGGC ACGTCTCTGT CCCCAAGCCC TTCAAACTCA ATACAAACTT
  Y
  TATTTTCAAT GCGAGAAATG GAATCCAGGG TCTAACCCAA CATCCAAACC CATCTCCTCT
  TCATCGCATC TTTTCAAGCC AGTCTCGTTT TGAGAAAGGA GACGACTAGA CCAGGCCAGC
  CTGGAATCCC CGGTATTCCG CGTGCGCAGT GCGGCTCATG CTACGGTGAA CATCCCATGC
  CTTGCACAGC ATGCAGAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404452	NES11055312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29997222					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404452	NES11055312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63239465 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	within coordinates
Platr12	pluripotency associated transcript 12	within coordinates
Rr188	regulatory region 188	within coordinates
Rr371405	regulatory region 371405	within coordinates
Tssr7060	transcription start site region 7060	261 bp upstream
Tssr7061	transcription start site region 7061	275 bp upstream
Tssr7062	transcription start site region 7062	287 bp upstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	52 bp upstream