rs29997280 SNP Detail

Summary

• ID
  rs29997280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63215561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGACAAA AACAAACAGT
  AGCGTGGACA GGTTCAAGAC AGCAACTAAA CCGATGCCTG AGGTTTAAGT CTCTCGTGAC
  CCTGGGAGAT GAACCGGTCT CCTGATGACA GGGCCATCTC CTGTCTTCCC CTGCAAAGAG
  AGAGTAGCTC GCAAGCCCGG ACTCCCAAAG GTCTCCTGAT CGGCTTAGGC TCCATCAGAC
  Y
  AGAAACCAAG GCTCATAACC CTCACCTGCC GGCTCTCCCG GGTTCCAGAG GTGGCGGGGC
  AGGAGCTGGT ACCCAGTCAA GGGCAAGAGG AGAACGGCTT GTCTGACCTA TGGGATGCAG
  ACCTGCCAAA AAAGAAAACA CCACTCGAAG CGCTTCAACT TGCCCACTTC AACGCGTCCT
  CACCTTTCCT CCGGAGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404251	NES11056870	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T		C	C	T	C
ss149153768	ENSMUSSNP12373	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C										T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29997280					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404251	NES11056870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63215561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	60 bp proximal
Eef1b2	eukaryotic translation elongation factor 1 beta 2	429 bp upstream
Gm56065	predicted gene, 56065	1581 bp upstream
Ndufs1	NADH:ubiquinone oxidoreductase core subunit S1	within coordinates
Rr29527	regulatory region 29527	within coordinates
Rr396073	regulatory region 396073	219 bp upstream
Tssr7054	transcription start site region 7054	416 bp upstream
Tssr7055	transcription start site region 7055	649 bp upstream
Tssr7056	transcription start site region 7056	689 bp upstream
Tssr7057	transcription start site region 7057	717 bp upstream
Tssr7058	transcription start site region 7058	1344 bp upstream
Tssr11882	transcription start site region 11882	251 bp downstream
Tssr11883	transcription start site region 11883	403 bp downstream