rs29997283 SNP Detail

Summary

• ID
  rs29997283
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63215971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCGGACC TGTCCGGGTC
  TCCCTGACCC CTCAAAACCC TGGCCGCTAA GTCAATATGG CGGCCACGGC AACCTCTGTC
  AGCCCGACCT GGAGGACGGA AAGCCAGGAG GGACTAGAAA CACAGATTCG ACTGTTTTTC
  CCCGTCTTCG GACCTGTTCG GCAATTTCCG AGAGCGAGCC CGGGAGGAAG CGGAGAAGAC
  K
  ACTTGGACCT GCAGTTCCGC CGGAAGTAGC CGAGGCCTTG CGTCCGAGCG CTTTCGTTCA
  ACTCCGGCTC CTCAGAGGGC GTTTCCCTTC GTTTCGGAGT CCTTGGAGCG AAGGCATTTT
  AAAATGCCTC CTTTATTAAT TTTCTTCCAA AGACAAGGGA AGGCCGGCGG ACGACCTGTG
  GGCCCTTTAG TTACCAAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404254	NES11056871	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29997283					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404254	NES11056871	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63215971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	within coordinates
Eef1b2	eukaryotic translation elongation factor 1 beta 2	19 bp upstream
Gm26457	predicted gene, 26457	1865 bp upstream
Gm56065	predicted gene, 56065	1171 bp upstream
Ndufs1	NADH:ubiquinone oxidoreductase core subunit S1	within coordinates
Rr29527	regulatory region 29527	within coordinates
Rr396073	regulatory region 396073	within coordinates
Tssr7054	transcription start site region 7054	6 bp upstream
Tssr7055	transcription start site region 7055	239 bp upstream
Tssr7056	transcription start site region 7056	279 bp upstream
Tssr7057	transcription start site region 7057	307 bp upstream
Tssr7058	transcription start site region 7058	934 bp upstream
Tssr7059	transcription start site region 7059	1648 bp upstream
Tssr11882	transcription start site region 11882	105 bp upstream
Tssr11883	transcription start site region 11883	within coordinates