rs29998158 SNP Detail

Summary

• ID
  rs29998158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63239979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGAACT TGGCTTACCA
  GTGTGTGCAT TGCTTTCGGC CTTCACGATA AACCTGTAAG TAAACCTTTT CTGATCACTG
  TCTAACCACG GGACTTATTG GAAACACTGG TTATTTCTGC CCAGTAACCT GGAGGCACAC
  AAGGTAACCA TTCGCTTACG GCCATTTTAC CAGAACTGAG CCAGGTACGC AAAGTCAGAA
  Y
  ATATATGACT ATTAGGCCTG GTGCCACAAA GTAATTAATT ACGATAGTTT TGTATTTTAC
  TCTCGTCTAA TTTACTAAAA AATTTCGTGG GATAAACGAC CCTACTAATT AATCTATTTA
  TTAGGGCTTA TAATAATTCC TACAACTTAG ATATGACCAC AGAAGGGGAG CAAATTTTTT
  AATTTGTAGC TAATTTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404458	NES11055318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29998158					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404458	NES11055318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63239979 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	194 bp distal
Platr12	pluripotency associated transcript 12	within coordinates
Rr188	regulatory region 188	within coordinates
Rr371405	regulatory region 371405	within coordinates
Tssr7060	transcription start site region 7060	242 bp downstream
Tssr7061	transcription start site region 7061	228 bp downstream
Tssr7062	transcription start site region 7062	179 bp downstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	within coordinates