rs29998169 SNP Detail

Summary

• ID
  rs29998169
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63216560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTCGC CATGGGATTC
  GGAGACCTGA AAACCCCTGC CGGCCTCCAG GTGCTCAACG ATTACCTGGC GGACAAGAGC
  TACATTGAGG GGTGAGCAGG AGCCGAGAGG CTGGGGGGCC GGGGCCACGT GGCGCGGGCT
  CGGCGGGAAG GAAGCGGGTC TCCGGATGCT GGGGGACGCC GAGTCAGTGC TCCCGGGGCC
  S
  GGATGCCAAT GGAGCGGGAC CTCCCGGGAG GGGCTGCCAG CATTATAATT GAGATGATGC
  TTGCTCTCCG TGTGCCCACG TCCAGCTGGT TCTTCCGCGT CTTTGGACAA GTTAGTTTGT
  TAGTTGAAAC CTGTGGCAAG TCTGGTGGGA TGAGTTCTCC TGGGTGGCAG ATAGTTCTTG
  GGCTTGCCTA GATTCAAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404260	NES11056875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29998169					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404260	NES11056875	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63216560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	within coordinates
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	1276 bp upstream
Gm56065	predicted gene, 56065	582 bp upstream
Ndufs1	NADH:ubiquinone oxidoreductase core subunit S1	579 bp upstream
Rr29527	regulatory region 29527	within coordinates
Rr396073	regulatory region 396073	479 bp downstream
Snora41	small nucleolar RNA, H/ACA box 41	1622 bp upstream
Tssr7054	transcription start site region 7054	482 bp downstream
Tssr7055	transcription start site region 7055	347 bp downstream
Tssr7056	transcription start site region 7056	305 bp downstream
Tssr7057	transcription start site region 7057	256 bp downstream
Tssr7058	transcription start site region 7058	345 bp upstream
Tssr7059	transcription start site region 7059	1059 bp upstream
Tssr11882	transcription start site region 11882	694 bp upstream
Tssr11883	transcription start site region 11883	584 bp upstream
Tssr11884	transcription start site region 11884	1457 bp downstream