rs29998172 SNP Detail

Summary

• ID
  rs29998172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63217418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACCTCT CTGATCATGT
  GCTTTGGACC TGGGGGGGCC ACCGCTGGGG TGTGAGGGTA GCTCGCTCAT TCGGTCCCTG
  GCCATTCTTC TGAAACTACC AGCAAGGGTG GAAGTTTGGG GAAGTGGATT CCAGTTCACT
  AAGAATGGAA GTGAGCATAC TTAATGAAAT CTCAAACAGA TGTTCATTCT GAAAGAGTAA
  R
  CCGTAGTGAG TACTGAATAC AATGTCTCCC ATGGGTGAAG AGTAAAGTTA TTTGCCTGGG
  ATTGTGCTAA AGGTTAAATA ACCAGAAGAG AGTGGGAGTT CCTGGGAAAG GAAGATTGTG
  TGTTTTGCCT AGAAAGGGCT TTGACACTGA CCTAATGTGG CAGAATGTTT GTTTTCAAGC
  CTGCCGGGAG TGAAGAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404263	NES11056877	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29998172					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404263	NES11056877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63217418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	713 bp distal
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	418 bp upstream
Gm56065	predicted gene, 56065	101 bp downstream
Ndufs1	NADH:ubiquinone oxidoreductase core subunit S1	1437 bp upstream
Rr29527	regulatory region 29527	within coordinates
Rr396073	regulatory region 396073	1337 bp downstream
Snora41	small nucleolar RNA, H/ACA box 41	764 bp upstream
Tssr7054	transcription start site region 7054	1340 bp downstream
Tssr7055	transcription start site region 7055	1205 bp downstream
Tssr7056	transcription start site region 7056	1163 bp downstream
Tssr7057	transcription start site region 7057	1114 bp downstream
Tssr7058	transcription start site region 7058	499 bp downstream
Tssr7059	transcription start site region 7059	201 bp upstream
Tssr11882	transcription start site region 11882	1552 bp upstream
Tssr11883	transcription start site region 11883	1442 bp upstream
Tssr11884	transcription start site region 11884	599 bp downstream