rs29998872 SNP Detail

Summary

• ID
  rs29998872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42515962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGTGTC TTCATTCAAA
  TGACATTTAA TTTCTCTCCT GTGGCACAGG GAACTTCTCT TCCTGTTTCT TTGGACCACT
  ATAAATATAC GACTAGGTTA GTGTGCTCAG AAAAAACTGA GAAGTTTGAG ACAAATCCTG
  ACCAATTGCT TTGTACTCAA GTAGAGTTTT TTTTTTTTTT TTTTTGAACC ATATTAGCAT
  R
  TCTCCAGCAG CAGTGATGCA GATCTGCTAA ACCCAATGCT GCCAAATGCA AGTACTAGCT
  GCAAGCCAGC TCTGGCCCCC GCCCCTATTC TGCCAGTGGC GAAACAGACA TGGACAGGAC
  ATCCACTAGT GGAGTGAGAT CGGCTGTCTC TGCAATTGTA AACAATCAGC TGCACCCGGT
  TTGCTGAAAT GTTTAAATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46904608	NES10954295	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29998872					SNP	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904608	NES10954295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42515962 () rs orientation: forward

Symbol	Name	Function Class
Rr8575	regulatory region 8575	within coordinates
Tenm1	teneurin transmembrane protein 1	within coordinates
Tssr5616	transcription start site region 5616	1841 bp downstream
Tssr163248	transcription start site region 163248	1760 bp downstream
Tssr163249	transcription start site region 163249	1862 bp downstream
Tssr163250	transcription start site region 163250	1885 bp downstream
Tssr163251	transcription start site region 163251	1901 bp downstream
Tssr163252	transcription start site region 163252	1943 bp downstream
Tssr163253	transcription start site region 163253	1970 bp downstream