rs29999061 SNP Detail

Summary

• ID
  rs29999061
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63217867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATG ATGAATAAAA TCAAATCACC
  W
  TCTTTCGGCT GAGCTCCTGA TGGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45145730	mCV23024142	ABI	CRAMUS_MOUSE	f	SNP		A						T		A
ss47404272	NES11056882	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	T	A	A		A	A	A		A	A	A	A		A
ss149153774	ENSMUSSNP3289476	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
ss319743117	CHEV_1_63225282	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29999061					SNP	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404272	NES11056882	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63217867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	1162 bp distal
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	within coordinates
Gm56065	predicted gene, 56065	550 bp downstream
Ndufs1	NADH:ubiquinone oxidoreductase core subunit S1	1886 bp upstream
Rr17014	regulatory region 17014	1934 bp proximal
Rr29527	regulatory region 29527	within coordinates
Rr396073	regulatory region 396073	1786 bp downstream
Snora41	small nucleolar RNA, H/ACA box 41	315 bp upstream
Tssr7054	transcription start site region 7054	1789 bp downstream
Tssr7055	transcription start site region 7055	1654 bp downstream
Tssr7056	transcription start site region 7056	1612 bp downstream
Tssr7057	transcription start site region 7057	1563 bp downstream
Tssr7058	transcription start site region 7058	948 bp downstream
Tssr7059	transcription start site region 7059	228 bp downstream
Tssr11883	transcription start site region 11883	1891 bp upstream
Tssr11884	transcription start site region 11884	150 bp downstream