rs29999075 SNP Detail

Summary

• ID
  rs29999075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38307024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAT ATTCTTATTT ATGAGCGAAG
  R
  GAATGAAGAC TTTATAGAAG ATCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39140015	mCV23687364	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		A
ss51097421	NES14354864	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G	A		G	A	G	G		G
ss148895308	ENSMUSSNP2421396	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss324320172	CHEV_13_38214917	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29999075					SNP	G	G	G	G	G	G	A	G	A	G	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51097421	NES14354864	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38307024 () rs orientation: forward

Symbol	Name	Function Class
Rr271625	regulatory region 271625	824 bp distal
Rr275880	regulatory region 275880	177 bp proximal
Rr275881	regulatory region 275881	776 bp proximal
Rr279089	regulatory region 279089	1512 bp distal
Rr279090	regulatory region 279090	1022 bp distal
Rr279091	regulatory region 279091	381 bp distal
Rr388287	regulatory region 388287	115 bp upstream