rs29999078 SNP Detail

Summary

• ID
  rs29999078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:68718001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC ACTGCACAGA TGGGTAGTAA
  Y
  TAATGCAGGA GGTGTGAAGA CACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39140018	mCV22669349	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss61831534	NES17768412	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	C		T	C	C	T		C
ss144512280	ENSMUSSNP1073935	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss324395780	CHEV_13_68708759	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29999078					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61831534	NES17768412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:68718001 () rs orientation: forward

Symbol	Name	Function Class
Mtrr	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	within coordinates
Rr1653	regulatory region 1653	1646 bp upstream
Rr388642	regulatory region 388642	748 bp downstream
Rr482077	regulatory region 482077	81 bp distal
Tg(Tek-cre)12Flv	transgene insertion 12, Richard A Flavell	within coordinates