rs29999107 SNP Detail

Summary

• ID
  rs29999107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63240638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACCTGA GTTTCTTTGT
  ATATCCTGCT GATGAGCTAT AAACCACCTG GCTTGGGAAC TAAAGAATTA TCTGTCTCAG
  AGAAAGAAAT GCTGTCCAGG AACTCTCTTA AATTTGGTGA ATATATTATA TACTGATTGT
  ATGAGAAAAA AATGTGATGG GGAAAAAAAA CTGGCCATTC TGTAGGAAAT TACTATCCAT
  Y
  TGAGCAAATT TTACTGATAA TAGTTAGAAA ACACTTTTTT TTAAATTGCA AGCTTCTATC
  AAAGTATGAA GCAAATGAAT ATTCTTGTAT ATATTCTAAC AAAAGAACAT CCTACCTACA
  TGGCTATTTT CTTCCTCCCT GTTTTGGGAT GTATTAGTTT ATGAGAAAAA ATTTTAAAAA
  TGCTATTTTT GTTATGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404467	NES11055325	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29999107					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404467	NES11055325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63240638 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	853 bp distal
Platr12	pluripotency associated transcript 12	within coordinates
Rr188	regulatory region 188	151 bp distal
Rr34224	regulatory region 34224	1564 bp proximal
Rr371405	regulatory region 371405	within coordinates
Tssr7060	transcription start site region 7060	901 bp downstream
Tssr7061	transcription start site region 7061	887 bp downstream
Tssr7062	transcription start site region 7062	838 bp downstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	within coordinates