rs29999893 SNP Detail

Summary

• ID
  rs29999893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42517238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCAGGAG TCACAATCCG
  CAAATGCATT CTATCACATC CTAGGGGGGA AGTTCGCCCA GAGTCCTTGG GGCGGAAGGC
  AGGCAGGATC AAGCGGGAAG GAAGTAAGCC AGAAGAAGCG GACCTACCTA GTCCAGGCGC
  AAGTTTCAGT GATGTCCTCA GGTGCGGTCC CCCGCCTCCT TGCCAGGTAC TCAGCTCTGC
  Y
  GGTGTGCTGT AAGTGCGCTG GACTTAGGGC GTCTTTGCTG GTTCCTGCGG GAAATGACTG
  TAAATCCACA TTACTGTTCG AGCTGCCGCT CGGGCCCCCG CATCGCTCTC CTCCAGCTGG
  CAGTGGCGGA GCTCTCAGCC CGCGGTCGCT TCTGGGCAGG AACCGAACCT GGCTACTGTT
  GTGCCAGTGA TCGCTGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss46904620	NES10954301	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs29999893					SNP	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904620	NES10954301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42517238 () rs orientation: forward

Symbol	Name	Function Class
Rr8575	regulatory region 8575	within coordinates
Rr394981	regulatory region 394981	1473 bp upstream
Tenm1	teneurin transmembrane protein 1	within coordinates
Tssr5616	transcription start site region 5616	565 bp downstream
Tssr163248	transcription start site region 163248	484 bp downstream
Tssr163249	transcription start site region 163249	586 bp downstream
Tssr163250	transcription start site region 163250	609 bp downstream
Tssr163251	transcription start site region 163251	625 bp downstream
Tssr163252	transcription start site region 163252	667 bp downstream
Tssr163253	transcription start site region 163253	694 bp downstream