rs30000020 SNP Detail

Summary

• ID
  rs30000020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63218546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATTTGA CTTAATGGTG
  AAAGTGTTGA GTGTTTAGGT GCACTTCTTA ATCTTCCTTA GAGCCTGCAG TTGTTGCGAA
  GTCTTCCATC CTACTAGACG TGAAGCCTTG GGATGATGAG ACGGACATGA CAAAACTAGA
  GGAGTGTGTC CGAAGCATTC AAGCAGATGG CCTGGTGTGG GGCTCCTGTA AGTGTGATGC
  Y
  TGTGTTTTAG GGATTTGTGC GTTTTCCCGT AAGGATTTCC TAACATTTAC CCCTTGATGT
  TCTTTTTTAG CTAAATTGGT TCCAGTGGGA TATGGAATTA AAAAGCTTCA AATACAGTGT
  GTAGTTGAAG ATGATAAGGT TGGAACGGAT ATGCTGGAAG AGCAAATTAC TGCTTTTGAG
  GACTACGTAC AGTCCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404281	NES11056894	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30000020					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404281	NES11056894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63218546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	1841 bp distal
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	633 bp downstream
Gm56065	predicted gene, 56065	1229 bp downstream
Rr17014	regulatory region 17014	1255 bp proximal
Rr29527	regulatory region 29527	545 bp distal
Rr396074	regulatory region 396074	1592 bp upstream
Snora41	small nucleolar RNA, H/ACA box 41	252 bp downstream
Tssr7058	transcription start site region 7058	1627 bp downstream
Tssr7059	transcription start site region 7059	907 bp downstream
Tssr11884	transcription start site region 11884	491 bp upstream