rs30000023 SNP Detail

Summary

• ID
  rs30000023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63218780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCCTAA CATTTACCCC
  TTGATGTTCT TTTTTAGCTA AATTGGTTCC AGTGGGATAT GGAATTAAAA AGCTTCAAAT
  ACAGTGTGTA GTTGAAGATG ATAAGGTTGG AACGGATATG CTGGAAGAGC AAATTACTGC
  TTTTGAGGAC TACGTACAGT CCATGGATGT GGCTGCTTTT AACAAGATTT AAATCATTCT
  Y
  AAGTCAGTGC ACTTAAATAA AAGCTTGAAA GATAACCCTT GGCTCTTCAT TTTGCTGTGA
  AATGGTATGT CTTCATTTTG AAGGAAAGGA TTCAGTGTAA CTCATTAGTG GCGAAAACTT
  GAACTGGAAA GAGAAATAGC TCAGCATTTT TAAACCACTC AGCTTGATGA CCAGACCAAC
  CTGAAGTTGT CTTTTAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404284	NES11056896	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30000023					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404284	NES11056896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63218780 () rs orientation: forward

Symbol	Name	Function Class
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	867 bp downstream
Gm56065	predicted gene, 56065	1463 bp downstream
Rr17014	regulatory region 17014	1021 bp proximal
Rr29527	regulatory region 29527	779 bp distal
Rr396074	regulatory region 396074	1358 bp upstream
Snora41	small nucleolar RNA, H/ACA box 41	486 bp downstream
Tssr7058	transcription start site region 7058	1861 bp downstream
Tssr7059	transcription start site region 7059	1141 bp downstream
Tssr11884	transcription start site region 11884	725 bp upstream