rs30000825 SNP Detail

Summary

• ID
  rs30000825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42518278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACGAGCAG AGGAAGAGAA
  GTGGAACTGA GACTGGTTCA GGAGTGTTTG AGGGTGAAGA GAGGGCAGGA GAAAGCTGGG
  TACCGAGCGA AAGGCAATAT GGACAAACAA AATTTAGATT TCATACCACA CTAGGATGTT
  TTCTGATCTC ACATGACCTG CACTTATCAT TTATCATTAT TTCCTTCAGA GGATGAGGTG
  R
  AATGCAGACT TAGAAGGAGT GTTTGTTAAT CTCAGAATCA ACCCGGGACA GTGTTTCCCA
  TTCACGATGT GCACAAGCAG ATACACAGGC ACGCGCGCGC GAACAGACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACTCAG TCGCAAGCAT GAACATACGC GCTAAAACTC
  TCCATCACTG CTTCAATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46904623	NES10954243	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30000825					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904623	NES10954243	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42518278 () rs orientation: forward

Symbol	Name	Function Class
Rr8575	regulatory region 8575	within coordinates
Rr394981	regulatory region 394981	433 bp upstream
Tenm1	teneurin transmembrane protein 1	275 bp upstream
Tssr5616	transcription start site region 5616	472 bp upstream
Tssr163248	transcription start site region 163248	539 bp upstream
Tssr163249	transcription start site region 163249	445 bp upstream
Tssr163250	transcription start site region 163250	416 bp upstream
Tssr163251	transcription start site region 163251	388 bp upstream
Tssr163252	transcription start site region 163252	351 bp upstream
Tssr163253	transcription start site region 163253	332 bp upstream