rs30000971 SNP Detail

Summary

• ID
  rs30000971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63219294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGTTGCTT ACTGTTTGGT TCACTCCATA GAGTAAGAGC
  GAAACTCTAG AAGGTGCTCT GATGGCCACG AGCACAACAC CTGTACATAA GAGTTTTTGG
  R
  AGTGTCCTGA AAGGAACATT GTAGGCTCAT AAGGTGGTCA AGTGTGGGTT TTCAGAACTC
  AACCTAGAGA TGGAGGGAAG TGCTGGGGGA GGCAGTATGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47404293	NES11056906	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30000971					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47404293	NES11056906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63219294 () rs orientation: forward

Symbol	Name	Function Class
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	1381 bp downstream
Gm56065	predicted gene, 56065	1977 bp downstream
Rr17014	regulatory region 17014	507 bp proximal
Rr29527	regulatory region 29527	1293 bp distal
Rr396074	regulatory region 396074	844 bp upstream
Snora41	small nucleolar RNA, H/ACA box 41	1000 bp downstream
Tssr7059	transcription start site region 7059	1655 bp downstream
Tssr11884	transcription start site region 11884	1239 bp upstream