rs30000993 SNP Detail

Summary

• ID
  rs30000993
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26385838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAC CGCCGCCACA GCCGCGTCCC
  S
  ACGCTCCGAA CCCTAGCAGG CCGGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45384496	mCV22681627	ABI	CRAMUS_MOUSE	f	SNP		C	G				G		C
ss51444658	NES14435660	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G		G	C	C	G		G	C	C	G		G
ss134694001	ENSMUSSNP775240	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
ss320687278	CHEV_3_26230611	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30000993					SNP	C	C	G	G	G	G	G	G	C	C	G	G	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444658	NES14435660	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26385838 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Cpgi13015	CpG island 13015	within coordinates
Cpgi13016	CpG island 13016	1483 bp proximal
Nlgn1	neuroligin 1	within coordinates
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	635 bp upstream
Tssr32830	transcription start site region 32830	175 bp upstream
Tssr32831	transcription start site region 32831	117 bp downstream
Tssr32832	transcription start site region 32832	141 bp downstream
Tssr32833	transcription start site region 32833	165 bp downstream
Tssr32834	transcription start site region 32834	215 bp downstream
Tssr32835	transcription start site region 32835	245 bp downstream