rs30003255 SNP Detail

Summary

• ID
  rs30003255
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCACAG TTCTCGCGGT
  GTCAGAAGTC TCGTGGCTGA AGCTCTGGCG GTGCGCGCGT TTTCTCTTCT TGGCTGCGTT
  CTTCTCTGGG ACCCAAAGTC TAAGGTCCCT TCGTTGCCGC CTCCCCCGGC ATCACTTCCT
  ATGGCGCCGG CCCTTTGTCC CCGAGAGCTG TTGGCGGCTC CTCTGCCCCC ATCGGGGTTG
  W
  TGGTTCCGCT TGCGCCCTTC CGCTTGCCCT TTTGATCTGA TCTCACTTTT GCCCGACACA
  GCGCGCCGGA AGGTTTCTCG AACCGGGAGA ACGGGAAGCC TGGGCAGTGC GAGCAGACCC
  GCCCGGCCCT CGGCTTTTCC GGGAGGAAGG CATATCTCAC TCCCGCGTGC AGCCCGCTAT
  GAGACAGAAT AGAGGGCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45384435	mCV24054166	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss135766582	ENSMUSSNP3115161	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T			T
ss320920400	CHEV_3_123211653	CHEVERUD	SCREENING_POP	f	SNP				A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs30003255					SNP	A	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1207 bp downstream
Rr397991	regulatory region 397991	1701 bp downstream
Rr584523	regulatory region 584523	1816 bp distal
Rr584524	regulatory region 584524	1681 bp distal
Rr584525	regulatory region 584525	within coordinates
Rr584526	regulatory region 584526	184 bp proximal
Rr584527	regulatory region 584527	575 bp proximal
Snhg8	small nucleolar RNA host gene 8	399 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	669 bp upstream
Tssr31551	transcription start site region 31551	167 bp downstream
Tssr31552	transcription start site region 31552	120 bp downstream
Tssr35502	transcription start site region 35502	394 bp upstream
Tssr35503	transcription start site region 35503	180 bp downstream