rs30003341 SNP Detail

Summary

• ID
  rs30003341
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113172300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAT GAAGCAGCAG CGAAATCAAG
  S
  TTCCCCCAAG GTGAGTTTTC TGGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39140658	mCV23842467	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss145257016	ENSMUSSNP5597371	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30003341					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113172300 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	240 bp distal
Mir449a	microRNA 449a	1768 bp upstream
Mir449b	microRNA 449b	1653 bp upstream
Mir449c	microRNA 449c	217 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	217 bp proximal
Rr486471	regulatory region 486471	377 bp distal
Rr486472	regulatory region 486472	338 bp proximal
Tssr121165	transcription start site region 121165	535 bp downstream
Tssr121166	transcription start site region 121166	1844 bp upstream