rs30004643 SNP Detail

Summary

• ID
  rs30004643
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG GGACAAGTAA AAGTATCTTT
  H
  AAAAAAAAAA AAAAAAAAAA GAACA                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss39141531	mCV23508562	ABI	CRAMUS_MOUSE	f	SNP	T	A	C
ss149161874	ENSMUSSNP655041	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30004643					SNP	T	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	1052 bp distal
Cpgi5774	CpG island 5774	481 bp distal
Gm47513	predicted gene, 47513	123 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1276 bp downstream
Rr273318	regulatory region 273318	468 bp proximal
Rr281559	regulatory region 281559	132 bp distal
Rr403821	regulatory region 403821	1082 bp downstream
Tssr120196	transcription start site region 120196	999 bp downstream
Tssr123018	transcription start site region 123018	1971 bp upstream
Tssr123019	transcription start site region 123019	1574 bp upstream
Tssr123020	transcription start site region 123020	1530 bp upstream
Tssr123021	transcription start site region 123021	1512 bp upstream
Tssr123022	transcription start site region 123022	1442 bp upstream
Zfp367	zinc finger protein 367	1520 bp upstream