rs30004847 SNP Detail

Summary

• ID
  rs30004847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80821039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCG GAGGTCGCCA CCGAGAGGGA
  S
  GAGACGCTGC ACGGTGGTGG TGGGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45384458	mCV24542449	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30004847					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80821039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	within coordinates
Glrb	glycine receptor, beta subunit	72 bp upstream
Gm54207	predicted gene, 54207	within coordinates
Gm65109	predicted gene, 65109	within coordinates
Rr578673	regulatory region 578673	501 bp distal
Rr578674	regulatory region 578674	215 bp distal
Rr578675	regulatory region 578675	within coordinates
Tssr33773	transcription start site region 33773	66 bp upstream