rs30005100 SNP Detail

Summary

• ID
  rs30005100
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:24181408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATGTGTG AACTACCACT
  GTCTAATGTC AGCCCCAGCT CTGGCGTGTT GACCCCCAGC TGAAGGAGTA AATATGGAGG
  ACTTTGTACT ATAGCTTGAA CAAAGCAAAC TGCCCACCGG GATGAAGGAG AGAATGAGAG
  CAGTACTCAG CTGGAAAGAA ACTGTTGCCT GCAGGAAAAT GGGTGAATCT AGAGATCATC
  K
  TGTTAAGCAC AATAAACCAG ACAGAAAGCA ACTAATATGT GGGATTTCTG GTGGTGGGTG
  GAGACAGAGA GGTTCATGGT GGGTGGGTGG GGGCTGTTAG GGAGAGGAGG CTGGGACAAG
  AAAGGGTAGT AGGGGGTACA TGTGACCAAA GGAGATTATA TGTGTGGATG AAAATGTTAC
  AAGGACAGCT TTTCTCATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39636788	mCV23641158	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss146849882	ENSMUSSNP1901591	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss325557932	CHEV_18_24206852	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30005100					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:24181408 () rs orientation: forward

Symbol	Name	Function Class
Rr405565	regulatory region 405565	1788 bp upstream
Rr534881	regulatory region 534881	521 bp distal
Rr534882	regulatory region 534882	648 bp distal
Rr534883	regulatory region 534883	1616 bp proximal
Rr534884	regulatory region 534884	1735 bp proximal