rs30005559 SNP Detail

Summary

• ID
  rs30005559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64206566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGT CAGACAGTCT GGGGTCAGTC
  R
  TTTAGGGATC GTTTTCCCAG ACTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39141537	mCV24356519	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss149158443	ENSMUSSNP6871981	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324378686	CHEV_13_64160060	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30005559					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64206566 () rs orientation: forward

Symbol	Name	Function Class
Gm30999	predicted gene, 30999	1665 bp downstream
Hsd17b3	hydroxysteroid (17-beta) dehydrogenase 3	within coordinates
Rr273309	regulatory region 273309	966 bp distal
Tssr122993	transcription start site region 122993	1059 bp downstream