rs30005815 SNP Detail

Summary

• ID
  rs30005815
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132796329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATACATAGT ATTCTTTCCA CTCCCCCGGC CCCGGACCTC
  ACTGCATCCC ATTTTCCCTT CCTTGAGAGC CCACCCCTTC ATGGCCCCTT ACTAGTTTAA
  W
  GGTGTTTTTC ATTAGTACTA TAGAACAACG TTCAAACCTC AATCTCCTTT TTGAAGTTAG
  GCCTCTTTAA AATGATTGAG TCACAATTTC AGCAGCGTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45384541	mCV25027911	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss135916540	ENSMUSSNP1111999	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30005815					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132796329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			612 bp proximal
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Ints12	integrator complex subunit 12			1287 bp upstream
Rr398028	regulatory region 398028			327 bp upstream
Rr398029	regulatory region 398029			1189 bp upstream
Rr585500	regulatory region 585500			within coordinates
Rr585501	regulatory region 585501			1247 bp proximal
Rr585502	regulatory region 585502			1283 bp proximal
Rr585503	regulatory region 585503			1455 bp proximal
Tssr31768	transcription start site region 31768			1259 bp upstream
Tssr31769	transcription start site region 31769			1276 bp upstream
Tssr31770	transcription start site region 31770			1318 bp upstream
Tssr31771	transcription start site region 31771			1355 bp upstream
Tssr35744	transcription start site region 35744			1168 bp downstream
Tssr35745	transcription start site region 35745			1196 bp downstream
Tssr35746	transcription start site region 35746			1230 bp downstream
Tssr35747	transcription start site region 35747			1461 bp downstream
Tssr35748	transcription start site region 35748			1477 bp downstream
Tssr35749	transcription start site region 35749			1810 bp downstream