rs30006571 SNP Detail

Summary

• ID
  rs30006571
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146016263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGTTAA TTAATCGTTC
  TCCCTCAACA GCCTGCGGAG GACTCTCCAG CGCTGTGAAA ACTAGCCAAC CATGGGGAAG
  CTTGATTCAA GTTCAAGGCC GATTCCCCTG CATCCCGCAA CCAAAGCCTA CGGTGACTTC
  TTCAGTAAGA TCTTTAGCAT CCAGTTCTGG TGGGCAACCA ACAGTTTGCT TCATTTTTTT
  W
  TAAACTCTGC TTATGAATGA GATTGCCTTA TGATGGTCCT GCTTTGTATT GTTTATTTGA
  TGTTAGAATC AATGTTACAC TAACTTTATG ACAAGTAGGC AGAAATTAGG ATTAGCATGA
  AACTATGCTA AATAGATTTT CCGTGAAAAC ACCAATATTT AGAAGATAGA GTATTCCAAG
  GTGAGCTGCT AGACCCAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45385902	mCV24076412	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss136043002	ENSMUSSNP26396	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
ss321009828	CHEV_3_145973472	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30006571					SNP	T	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146016263 () rs orientation: forward

Symbol	Name	Function Class
D3Mit292	DNA segment, Chr 3, Massachusetts Institute of Technology 292	1288 bp proximal
Rr586996	regulatory region 586996	420 bp proximal