rs30006799 SNP Detail

Summary

• ID
  rs30006799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101424428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGAATAGC AGCCCCGTTG TTCCCTGGAG GCTGAGCCAG
  TGCCTTCTCA TCCAGAGTAC ATTTGCGCTT TTCCAATTTA CGAGCTGAAC CCTGGGCTGC
  Y
  TACCTTTGGT CCCCTCAAGG CCAGCTCGGT GTTCTTTGTT CCCTAAAGTC TCCCCAGAGT
  GAAACATTAA CAGGCGGTGG GGCTAAAGGA CCTGGGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45384557	mCV23083605	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss51584369	NES14670586	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		C	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30006799					SNP	C	C	C	C	T	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51584369	NES14670586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101424428 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Rr582066	regulatory region 582066	38 bp distal
Rr582067	regulatory region 582067	within coordinates
Rr582068	regulatory region 582068	1456 bp proximal