rs30007455 SNP Detail

Summary

• ID
  rs30007455
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCTATGC CCCACCTGTA
  GCCTTAACTA CAAATGGTTC AGTACTGCCT GTGCCAGGGA AAGGCAACCA CATCCTTATT
  TTGCAAAGTT GTTCATAAGC ATCTTGCAAG CCTACCGTTG TTTCATAGGT TCTTATGACT
  ATTGTCGCTA CGCCCACCTT GCACTCAAGT CTTTGTTTCA GAAGGTTCTT ATGTCTAATG
  K
  TTAACTTGTT ATGCTTACAT GCTCCTGGTA CCTGGTTTAT TTTGCCTGCC AACCCCCACC
  CCCACCCCCC ACAATTCGGA AACTACCTAC CCCCGATCTA TAAAAAACTT GTCTTCCTCA
  TATTCAATGC TGACTTCTTA AACTCCGCCT TAGGGATAGG CAGCCCAATG TACATGAATT
  TTAAAAGCTT ACTTTAATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39637362	mCV27569831	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss325524304	CHEV_18_10611873	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30007455					SNP	T	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1227 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1523 bp upstream
Rr533778	regulatory region 533778	1777 bp distal
Rr533780	regulatory region 533780	1033 bp distal
Rr533781	regulatory region 533781	1739 bp distal
Rr533782	regulatory region 533782	1433 bp distal
Tssr152429	transcription start site region 152429	1759 bp upstream
Tssr152430	transcription start site region 152430	1731 bp upstream
Tssr152431	transcription start site region 152431	1587 bp upstream
Tssr152432	transcription start site region 152432	1563 bp upstream
Tssr152433	transcription start site region 152433	1512 bp upstream