rs30008657 SNP Detail

Summary

• ID
  rs30008657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:71882360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GAAGGAGGCA AGCAGCTATT
  R
  CATACACAGG CAGACAGACT CTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39140717	mCV22798008	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss144609293	ENSMUSSNP169723	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss324424874	CHEV_13_71871689	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30008657					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:71882360 () rs orientation: forward

Symbol	Name	Function Class
Gm40999	predicted gene, 40999	within coordinates
Rr1731	regulatory region 1731	within coordinates
Rr280205	regulatory region 280205	332 bp distal
Rr284862	regulatory region 284862	within coordinates
Rr388677	regulatory region 388677	1766 bp upstream