rs30009023 SNP Detail

Summary

• ID
  rs30009023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:158265383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTGCTA ACCAAGAGGC
  ATCTCAGGCT GAGTTCCCTT TCGCTTTCTT TCACCTCTGG TCAACTTTAT TAAAAATAAA
  AGGGAACTTC AGCAACTGGG ATGCTGAGCT TCTCATAGGC TCAGCTTGAA ACAAAGAAAA
  GCTACTTCCT AATACAGTTT CTCTTGCGTT GGAGGGATCA CGTGTTCACT TTCACTGGTA
  Y
  GCACTCTGCT CGCCCACGCG ATAAAACCTC TATTGTGCTT AGAAATTTTG CTCAGGTTAA
  AATATGCTCA AACACAAATT GCTTCTCATC CATCAGCAGA GCCCCATCTA GAGACTCGGG
  TGCACATGCT CTCCTGCTGA CCCAATTACC ACTGCAGGTA ATTCCGATGT GCTTAAGTGT
  ACAGGGAAAG TAATAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45384584	mCV25102038	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47494578	NES10303240	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	C	T	T	T	C	C
ss136136851	ENSMUSSNP4670699	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30009023					SNP	C	C	T	T	T	C	T	T	C	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47494578	NES10303240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:158265383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13981	CpG island 13981	1220 bp proximal
Lrrc7	leucine rich repeat containing 7	within coordinates
Tssr36312	transcription start site region 36312	1588 bp downstream
Tssr36313	transcription start site region 36313	1612 bp downstream
Tssr36314	transcription start site region 36314	1795 bp downstream
Tssr36315	transcription start site region 36315	1837 bp downstream
Tssr36316	transcription start site region 36316	1993 bp downstream