rs30009333 SNP Detail

Summary

• ID
  rs30009333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148781704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT AGAGCTTACA AACAATTCAT
  Y
  AAACTTAAAA TTTTTGTTTA TCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45384939	mCV24936677	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss136066681	ENSMUSSNP7037658	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30009333					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148781704 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	within coordinates
Rr587253	regulatory region 587253	993 bp proximal
Tssr36091	transcription start site region 36091	1021 bp downstream
Tssr36092	transcription start site region 36092	1046 bp downstream
Tssr36093	transcription start site region 36093	1083 bp downstream
Tssr36094	transcription start site region 36094	1111 bp downstream
Tssr36095	transcription start site region 36095	1168 bp downstream
Tssr36096	transcription start site region 36096	1273 bp downstream