rs30009458 SNP Detail

Summary

• ID
  rs30009458
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52014179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG CTGCCTCACC ACAGCCCACC
  M
  CAGCCTGGGG ACAGCTCACA AGAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45386799	mCV22342038	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss135174919	ENSMUSSNP2911133	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss320763386	CHEV_3_51910680	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30009458					SNP	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52014179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13152	CpG island 13152	1017 bp distal
Gm65327	predicted gene, 65327	within coordinates
Maml3	mastermind like transcriptional coactivator 3	1439 bp upstream
Rr77597	regulatory region 77597	978 bp distal
Rr83056	regulatory region 83056	1099 bp proximal
Tssr33251	transcription start site region 33251	1836 bp upstream
Tssr33252	transcription start site region 33252	1726 bp upstream
Tssr33253	transcription start site region 33253	1702 bp upstream