rs30009517 SNP Detail

Summary

• ID
  rs30009517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:67102418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCG CACAGTCCAT CTTCTTGGAC
  Y
  TTATGCATCT TCCCCTGCCC TGTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39637555	mCV25058569	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147343251	ENSMUSSNP331408	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30009517					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:67102418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10165	CpG island 10165	124 bp distal
Gm50164	predicted gene, 50164	within coordinates
Rr356406	regulatory region 356406	1654 bp distal
Rr393837	regulatory region 393837	177 bp upstream