rs30010142 SNP Detail

Summary

• ID
  rs30010142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61926681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTA CATTGTCAGC ATTAATACAG
  Y
  GTGTTTGTCA TAACTCTTTT GGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39637400	mCV24037005	ABI	CRAMUS_MOUSE	f	SNP	T	T					C		C
ss50425672	NES13465435	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C		T	C	C	T		C	T	T		T
ss147260907	ENSMUSSNP5989056	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss325645772	CHEV_18_61953264	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30010142					SNP	T	T	C	T	T	C	C	T	C	C	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50425672	NES13465435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61926681 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	1243 bp downstream
Rr346544	regulatory region 346544	481 bp distal
Rr346545	regulatory region 346545	within coordinates
Rr351728	regulatory region 351728	536 bp distal
Rr354902	regulatory region 354902	1281 bp distal
Rr356351	regulatory region 356351	84 bp proximal