rs30010296 SNP Detail

Summary

• ID
  rs30010296
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGA ATGAACCGCA CCCGGCGCGG
  W
  GTTCCGCCTA GTGGGCTGGA ACAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46363587	mCV22323056	ABI	CRAMUS_MOUSE	f	SNP		A	A					T		T
ss47774673	NES11262120	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A		T	T	A	T		T	A	A	T		A
ss136941102	ENSMUSSNP5440470	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								T
ss323187633	CHEV_9_106794288	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30010296					SNP	A	A	A	A	A	T	A	T	T	T	A	T	A	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774673	NES11262120	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769156 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	868 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	19 bp upstream
Rr368849	regulatory region 368849	within coordinates
Rr686409	regulatory region 686409	553 bp distal
Rr686410	regulatory region 686410	436 bp distal
Rr686411	regulatory region 686411	149 bp distal
Rr686412	regulatory region 686412	within coordinates
Rr686413	regulatory region 686413	12 bp proximal
Rr686414	regulatory region 686414	268 bp proximal
Rr686415	regulatory region 686415	1477 bp proximal
Tssr86942	transcription start site region 86942	1746 bp downstream
Tssr86943	transcription start site region 86943	157 bp upstream
Tssr86944	transcription start site region 86944	493 bp upstream
Tssr86945	transcription start site region 86945	519 bp upstream
Tssr91353	transcription start site region 91353	584 bp upstream
Tssr91354	transcription start site region 91354	566 bp upstream
Tssr91355	transcription start site region 91355	560 bp upstream
Tssr91356	transcription start site region 91356	519 bp upstream
Tssr91357	transcription start site region 91357	37 bp upstream
Tssr91358	transcription start site region 91358	10 bp upstream
Tssr91359	transcription start site region 91359	8 bp downstream