rs30011454 SNP Detail

Summary

• ID
  rs30011454
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14952878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC ACAGCAATGA CCTAACAGCT
  S
  TCTTCTCATC TCTAGGACCA GAGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45385171	mCV23564295	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	G
ss134618303	ENSMUSSNP3468135	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
ss320667957	CHEV_3_14887818	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30011454					SNP	C	C	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14952878 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	Intron
Cpgi12992	CpG island 12992	604 bp distal
Rr573722	regulatory region 573722	1380 bp distal
Rr573723	regulatory region 573723	1658 bp distal
Rr573724	regulatory region 573724	244 bp distal
Rr573725	regulatory region 573725	1311 bp distal
Rr573726	regulatory region 573726	628 bp distal
Rr573727	regulatory region 573727	575 bp distal
Rr573728	regulatory region 573728	393 bp distal
Rr573729	regulatory region 573729	820 bp proximal
Rr573730	regulatory region 573730	1251 bp proximal
Tssr826	transcription start site region 826	1498 bp downstream
Tssr827	transcription start site region 827	1391 bp downstream
Tssr828	transcription start site region 828	1335 bp downstream
Tssr829	transcription start site region 829	1249 bp downstream
Tssr830	transcription start site region 830	1203 bp downstream
Tssr831	transcription start site region 831	1170 bp downstream
Tssr832	transcription start site region 832	1097 bp downstream
Tssr28466	transcription start site region 28466	1118 bp downstream
Tssr28467	transcription start site region 28467	959 bp downstream
Tssr28468	transcription start site region 28468	402 bp downstream