rs30012569 SNP Detail

Summary

• ID
  rs30012569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41579963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTCACACA GAAAAGAATT TGGAGACTAC AGACTGTCCC
  AATTTGCATA TTTGTACACA AAGGAAAGAA GTGGTAATCA TATCTCCTTT CTTTCTCAGG
  R
  AGACATAATA AAAGATGCAT GAATAAATAA GATGAACTAG CTATGTTGGC TTCAATTTTA
  GACAGGCAAT TTCTTTCTTC TTTCCTATTC ATTTTCTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45385865	mCV24365053	ABI	CRAMUS_MOUSE	f	SNP				A		G
ss60397266	NES15898193	PERLEGEN	MM_PANEL2	f	SNP	A	A	A		G		A		G	A	G	G		A
ss135042552	ENSMUSSNP3773818	ENSEMBL	ENSEMBL_Sanger	f	SNP						G
ss320728933	CHEV_3_41429450	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30012569					SNP	A	A	A	A	G	G	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397266	NES15898193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41579963 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	1192 bp downstream