rs30012641 SNP Detail

Summary

• ID
  rs30012641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136380329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGTCAG AGGGTAGATT CCTGGGAAGA GTCCTGTTGA
  CTGTGCTCTT TTCCTCTGGA GATGTTTGCG TTTGGTTTGG GGACGATAGC TGCTGTTGTA
  Y
  GCACTGTCAC CTTTGATCTC TTCATGTAAT CAGGCACAGG TAGAGCGATT CTGGGAAGAT
  GTCTAAGATC ATAACAAGCA AGAATGCAGG AGTCAACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45385675	mCV25268830	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss135936929	ENSMUSSNP6487486	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320974490	CHEV_3_136337532	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30012641					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136380329 () rs orientation: forward

Symbol	Name	Function Class
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr585839	regulatory region 585839	188 bp distal
Rr585840	regulatory region 585840	within coordinates
Tssr31877	transcription start site region 31877	1469 bp downstream