rs30012856 SNP Detail

Summary

• ID
  rs30012856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGCTCCA GGCAGGTGCT
  CCAGGCAGGT GCTCCAGACG GGTGTTCAGT GGCTACTAGA AAACAGCACT GATGTGTCTG
  CCGTTACATT TCAAAAAAGA AGTCACCTGA GGCTTGGCTG GACTCTGGAC TCCTGTGTTT
  CAGTCCAGGT ACACTGTGTT TTCTAGAACA GAGATTCTAA GACTTCCCAA GAAGTCAGTG
  Y
  TCTGCAGGGC CCAGGCATAG CTCTGCCCAT GATACACATA GGAAAAACTG GGTCAGGTCA
  AGAGAGCTCT CCGGGTGAGG CCAGGGCCCC TATCCTGGAG GAGGACATCG CCCAGGTCTG
  CATCCCTGGT TTCCACGGCC GCTGCTGTCG CTGTAGGCTG CGCTACCTCT CAAGCTGATT
  GGGCACATCT CATTTTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39637686	mCV23909313	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147616953	ENSMUSSNP6610525	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30012856					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601498 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	1249 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	292 bp proximal
Tssr152152	transcription start site region 152152	735 bp upstream
Tssr152153	transcription start site region 152153	763 bp upstream
Tssr152154	transcription start site region 152154	877 bp upstream
Tssr152155	transcription start site region 152155	915 bp upstream
Tssr152156	transcription start site region 152156	988 bp upstream
Tssr152157	transcription start site region 152157	1039 bp upstream
Tssr152158	transcription start site region 152158	1096 bp upstream
Tssr152159	transcription start site region 152159	1126 bp upstream
Tssr152160	transcription start site region 152160	1176 bp upstream
Tssr152161	transcription start site region 152161	1193 bp upstream
Tssr152162	transcription start site region 152162	1209 bp upstream
Tssr152163	transcription start site region 152163	1234 bp upstream
Tssr152164	transcription start site region 152164	1274 bp upstream
Tssr152165	transcription start site region 152165	1327 bp upstream
Tssr152166	transcription start site region 152166	1393 bp upstream
Tssr152167	transcription start site region 152167	1408 bp upstream
Tssr152168	transcription start site region 152168	1443 bp upstream
Tssr152169	transcription start site region 152169	1504 bp upstream
Tssr152170	transcription start site region 152170	1585 bp upstream
Tssr152171	transcription start site region 152171	1645 bp upstream
Tssr152172	transcription start site region 152172	1752 bp upstream
Tssr152173	transcription start site region 152173	1775 bp upstream
Tssr152174	transcription start site region 152174	1793 bp upstream
Tssr152175	transcription start site region 152175	1816 bp upstream
Tssr154083	transcription start site region 154083	844 bp downstream
Tssr154084	transcription start site region 154084	868 bp downstream
Tssr154085	transcription start site region 154085	1140 bp downstream
Tssr154086	transcription start site region 154086	1695 bp downstream
Tssr154087	transcription start site region 154087	1910 bp downstream
Tssr154088	transcription start site region 154088	1950 bp downstream