rs30013564 SNP Detail

Summary

• ID
  rs30013564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26383932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC TTTCAGGGGA GTCATCTGAC
  Y
  GACCCTGCCC AGAGTCAACT AGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45384972	mCV22681610	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss134693983	ENSMUSSNP2343004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320687272	CHEV_3_26228705	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30013564					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26383932 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	1367 bp upstream
Cpgi13015	CpG island 13015	1511 bp proximal
Nlgn1	neuroligin 1	Intron
Rr574316	regulatory region 574316	945 bp proximal
Rr574317	regulatory region 574317	1446 bp proximal
Tssr32829	transcription start site region 32829	1254 bp downstream
Tssr32830	transcription start site region 32830	1717 bp downstream