rs30014297 SNP Detail

Summary

• ID
  rs30014297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151995594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGCTCGG TACTTTCAGA
  GGACCCAAGT TTGGTTCCCA GCATCCGTGT TGGATAGCTC ACAAGCCAGC TCCATGGGAT
  CTGATGTCCT CTTCTGGGCT CATGGACTCA CACACACACA CACACACACA CACACACACA
  CACACACTCA CACACACACA CACATGCACA TTAATAAAAA TAGATCTTTA AAAATTTTTT
  W
  AAAAATCTAA GGTAAATTTG ATGTAGCTTT CAAACATAAG AAAGTAATTG TTTTCTTTAT
  AATTTTGTAT TTGGCTTTGT ACCTCTGGCT GGCCTCGAGC TCCCTGAATA GAGTAGGCTG
  GCCTTGAGCT CAGCGAGAGC TGGGACAGAA GGCAGGGCAG ATGGCTGGCT TTACTATTAG
  CCACCTTGTT TCATTTTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45388088	mCV24027896	ABI	CRAMUS_MOUSE	f	SNP	A		T
ss136101780	ENSMUSSNP2492942	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss321028598	CHEV_3_151952921	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30014297					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151995594 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587515	regulatory region 587515	1903 bp distal
Rr587516	regulatory region 587516	915 bp distal
Tssr32405	transcription start site region 32405	369 bp upstream