rs30014640 SNP Detail

Summary

• ID
  rs30014640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52224321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT CTCACCACAA CTCCCTTCTT
  R
  GAAGGTGCTA GGGTGTCACA ACAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45885092	mCV22669146	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss133191167	ENSMUSSNP2937231	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss321799675	CHEV_6_52197340	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30014640					SNP	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52224321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17436	CpG island 17436	569 bp distal
Cpgi17437	CpG island 17437	1967 bp proximal
Gm56036	predicted gene, 56036	1237 bp downstream
Gm56037	predicted gene, 56037	756 bp downstream
Gm56038	predicted gene, 56038	533 bp downstream
Gm56039	predicted gene, 56039	80 bp upstream
Gm56040	predicted gene, 56040	991 bp upstream
Gm56041	predicted gene, 56041	1958 bp upstream
Hoxa11	homeobox A11	1537 bp upstream
Hoxa11os	homeobox A11, opposite strand	within coordinates
Tssr1847	transcription start site region 1847	1410 bp downstream
Tssr56519	transcription start site region 56519	1354 bp downstream
Tssr56520	transcription start site region 56520	1329 bp downstream
Tssr61029	transcription start site region 61029	1578 bp upstream
Tssr61030	transcription start site region 61030	1548 bp upstream
Tssr61031	transcription start site region 61031	1515 bp upstream