rs30015298 SNP Detail

Summary

• ID
  rs30015298
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42678631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGAAGC TGATCAAGAT
  ACATAAGTGG GCAATATAAC TGACCACCTG AAGTTTCTAT ACTTCATTCT GCTTACAGAA
  TATTTATTAA GCTTGTTTAA TAGGTGCTTT CTCATTTGAC GGTTTGAAAG TCCTTTATTG
  TAAAGATAAT CCTGTCTGAT GACAAACAGC AGCCATGATG ATCACTTTGG ACCTTTAAAC
  K
  GGCTATATTC TATTTACTCT TGAGAAATAG GTTTCCTTCT GTATTTCTAA GGTAATGTTT
  TTTATTATTT CTGCAGTATC TAGTGGCCCC TGAAGCATCA GTAAATCGGG AGACATACTT
  CCTTTAGAAT GCTGTGAACT TTCAGAGGAG ATCCCAAAGC TTCTGAAGCA CTGAGTTTAG
  GAGTGACTCT TCTGCTAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46904881	NES10952588	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30015298					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904881	NES10952588	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42678631 () rs orientation: forward

Symbol	Name	Function Class
Gm14579	predicted gene 14579	within coordinates
Tex13c1	TEX13 family member C1	1406 bp upstream
Tssr160863	transcription start site region 160863	1172 bp upstream
Tssr160864	transcription start site region 160864	1183 bp upstream
Tssr160865	transcription start site region 160865	1198 bp upstream
Tssr160866	transcription start site region 160866	1207 bp upstream