rs30015309 SNP Detail

Summary

• ID
  rs30015309
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5641280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA TTACACCCAG AAGCAACACC
  S
  GGTCTGAGGA AAGCCGGATA AGGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45386284	mCV25092912	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss320638397	CHEV_3_5576220	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30015309					SNP	G	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5641280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12950	CpG island 12950	within coordinates
Gm6146	predicted gene 6146	within coordinates
Pex2	peroxisomal biogenesis factor 2	mRNA-UTR
Rr573198	regulatory region 573198	103 bp distal
Rr573199	regulatory region 573199	within coordinates
Rr573200	regulatory region 573200	153 bp proximal
Rr573201	regulatory region 573201	282 bp proximal
Tssr28281	transcription start site region 28281	307 bp downstream
Tssr32526	transcription start site region 32526	110 bp upstream
Tssr32527	transcription start site region 32527	58 bp upstream
Tssr32528	transcription start site region 32528	37 bp upstream
Tssr32529	transcription start site region 32529	within coordinates
Tssr32530	transcription start site region 32530	13 bp downstream