rs30015547 SNP Detail

Summary

• ID
  rs30015547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC TGCTAGGAAT TAACAGAAAT
  Y
  GTAAAAGTAT ACCACTTCCT CATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45884798	mCV23115542	ABI	CRAMUS_MOUSE	f	SNP		C	T						C
ss51375323	NES13725672	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C	C	C	T	C	C	C	C	C	C
ss133421919	ENSMUSSNP6165910	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30015547					SNP	C	C	T	C	T	T	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375323	NES13725672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806213 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	1936 bp downstream
Tssr57868	transcription start site region 57868	1988 bp downstream
Tssr57869	transcription start site region 57869	1950 bp downstream
Tssr57870	transcription start site region 57870	1791 bp downstream
Tssr57871	transcription start site region 57871	1773 bp downstream
Tssr57872	transcription start site region 57872	1003 bp downstream
Tssr57873	transcription start site region 57873	957 bp downstream
Tssr57874	transcription start site region 57874	940 bp downstream
Tssr57875	transcription start site region 57875	920 bp downstream
Tssr57876	transcription start site region 57876	890 bp downstream
Tssr57877	transcription start site region 57877	8 bp upstream
Tssr57878	transcription start site region 57878	52 bp upstream
Tssr57879	transcription start site region 57879	68 bp upstream
Tssr57880	transcription start site region 57880	121 bp upstream
Tssr57881	transcription start site region 57881	321 bp upstream
Tssr57882	transcription start site region 57882	419 bp upstream
Tssr57883	transcription start site region 57883	1695 bp upstream