rs30016160 SNP Detail

Summary

• ID
  rs30016160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50912285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATGCAA TAGGGTGTTG
  TCTTTCAAAA AGTGTTACTC TGAAGACTCA TTCTGAGATA TTCTGAGATA ATCTTTAAAA
  AAAAAAGGTT CAGAACTGGA AAGTTTGAGA ATGCTACATT AAAGAAGCTT GGGAAGCCCG
  GCGTGAGGGC TCCTCTTCTT AAGTCCTTAC CATTGTAGCC GATTAAAGGC TCCTGGGTAC
  Y
  AAAGAAATCT GACTGACTCT GTTCAATAAA GCATTTTCCA AGCTAATTTG ATGCAAAGGT
  ATCTCTTCTA TTCATGTACT AACACTCCTC AGTGTTCATT AGCAGCAAGC AGCCTTTGGA
  AAGCCTCTGG TTTAACCTAG AAGATGAACC GTCAGCACCT CTGGGAATCC CTCCACCTTG
  TGTGCTGCTC TTGTGGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45885402	mCV23306511	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss133185752	ENSMUSSNP1774208	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30016160					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50912285 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	within coordinates
Gm67430	predicted gene, 67430	within coordinates
Rr543	regulatory region 543	within coordinates
Rr399654	regulatory region 399654	1828 bp upstream
Rr630096	regulatory region 630096	1453 bp distal
Rr630097	regulatory region 630097	928 bp distal
Rr630098	regulatory region 630098	667 bp distal
Rr630099	regulatory region 630099	1783 bp proximal
Rr630100	regulatory region 630100	1955 bp proximal
Rr630101	regulatory region 630101	2000 bp proximal