rs30016253 SNP Detail

Summary

• ID
  rs30016253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42679937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCCCAG AATTCCTTGC
  AGCATGAGTC ATTTTCCCCC CTTTGTGACG TGTCCTGTGG TGTGTTCATT AACTAAGGTT
  CAGTTATAGA GTACAGTGGG CTTGGTCAGA AGATCAGCTT GGCTTTTGCC AGAAGGAAGG
  AGAACAGGAG GAGTAGAGGA AGAAATGAAA AATTGACAAG GGCTGAAGTA GAACTGATTC
  Y
  GAAGGGAAAG GGGTAACTAT TTGGTCACAT GTGTGGCAGC TGTATTAGTA ACCACAGTGG
  AGGTTCATGA GAATGTTACA TGGCTAAGCT GCAACAACCA TGGCAATTGA ATTTGGAGAC
  CATAGCAGCG GCTTCCACCA TACTGAAGTA ATCAGATTCA TTAATAATGA AGTCCTTAAG
  AATGGAGGGA GTTCTGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46904899	NES10952543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30016253					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904899	NES10952543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42679937 () rs orientation: forward

Symbol	Name	Function Class
Gm14579	predicted gene 14579	1035 bp upstream
Tex13c1	TEX13 family member C1	100 bp upstream
Tssr160863	transcription start site region 160863	127 bp downstream
Tssr160864	transcription start site region 160864	116 bp downstream
Tssr160865	transcription start site region 160865	105 bp downstream
Tssr160866	transcription start site region 160866	88 bp downstream