rs30016753 SNP Detail

Summary

• ID
  rs30016753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86584571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC ATCACCCCTT CTTCACTGTA
  Y
  GGCAACTACC GGCATGAACA CGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45884478	mCV23942305	ABI	CRAMUS_MOUSE	f	SNP	T	T					C		T
ss51751756	NES14803866	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T		C	T	T	C		C	T	C	C		C
ss133357947	ENSMUSSNP660973	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321846799	CHEV_6_86557583	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30016753					SNP	T	T	C	C	T	T	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751756	NES14803866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86584571 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	within coordinates
Gm67317	predicted gene, 67317	1416 bp downstream
Rr150658	regulatory region 150658	within coordinates
Rr368114	regulatory region 368114	65 bp upstream
Tssr1918	transcription start site region 1918	1979 bp downstream
Tssr1919	transcription start site region 1919	190 bp upstream
Tssr57493	transcription start site region 57493	248 bp upstream
Tssr57494	transcription start site region 57494	1973 bp upstream
Tssr61819	transcription start site region 61819	33 bp upstream
Tssr61820	transcription start site region 61820	37 bp downstream
Tssr61821	transcription start site region 61821	59 bp downstream
Tssr61822	transcription start site region 61822	71 bp downstream
Tssr61823	transcription start site region 61823	105 bp downstream
Tssr61824	transcription start site region 61824	1726 bp downstream
Tssr61825	transcription start site region 61825	1752 bp downstream