rs30016967 SNP Detail

Summary

• ID
  rs30016967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101833140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG AGGCTGGGCT CAGCTACAGA
  R
  TGAGATCCCT GGCAGCCAGG ACTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45388219	mCV22786727	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss320853503	CHEV_3_101729747	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30016967					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101833140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13622	CpG island 13622	1013 bp distal
Rr76960	regulatory region 76960	739 bp distal
Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	1371 bp upstream
Tssr34811	transcription start site region 34811	1609 bp upstream
Tssr34812	transcription start site region 34812	1525 bp upstream
Tssr34813	transcription start site region 34813	1416 bp upstream
Tssr34814	transcription start site region 34814	1370 bp upstream
Tssr34815	transcription start site region 34815	1332 bp upstream
Tssr34816	transcription start site region 34816	1304 bp upstream
Tssr34817	transcription start site region 34817	1279 bp upstream
Tssr34818	transcription start site region 34818	1184 bp upstream